PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10028653

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

M-type_MADS

Protein Properties

Length: 173aa MW: 19946 Da PI: 8.6926

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10028653	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.3	1.3e-10	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i + r++tf kR +g+ K E+S+LC++ ++ +ifs+ Lus10028653 10 FIAKEAARKITFRKRTTGLWNKLREISTLCGVAACGVIFSN 50 7888999********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.3E-9	1	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.675	1	50	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.45E-15	2	100	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.0E-13	10	53	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGRSKVRHEF IAKEAARKIT FRKRTTGLWN KLREISTLCG VAACGVIFSN FTGKGKESQP 60 KVEAWPSGVE AVEMLKRMKK LPEKKQKKYK LNHDSLLNAR VEKLEEKLKN EIENNQWLEI 120 EWLLRHEDVH MEEALSGGYI NLNDPAKLKS MGEKVEELIK QVDEQIEDLE NE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14464	11	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22590.2	2e-15	AGAMOUS-like 87

Link Out ? help Back to Top
Phytozome	Lus10028653