PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028653
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19946 Da    PI: 8.6926
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028653genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.31.3e-101050242
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 +i  +  r++tf kR +g+  K  E+S+LC++ ++ +ifs+
  Lus10028653 10 FIAKEAARKITFRKRTTGLWNKLREISTLCGVAACGVIFSN 50
                 7888999********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-9161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.675150IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-152100IPR002100Transcription factor, MADS-box
PfamPF003199.0E-131053IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRSKVRHEF IAKEAARKIT FRKRTTGLWN KLREISTLCG VAACGVIFSN FTGKGKESQP  60
KVEAWPSGVE AVEMLKRMKK LPEKKQKKYK LNHDSLLNAR VEKLEEKLKN EIENNQWLEI  120
EWLLRHEDVH MEEALSGGYI NLNDPAKLKS MGEKVEELIK QVDEQIEDLE NE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144641115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.22e-15AGAMOUS-like 87